WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48C5.1.1 Sequence Name  C48C5.1.1
Length (nt)  1412   Chromosome Location  X: 8980976-8985063
Chromosome . Primary Identifier  X Chromosome Location . Start  8980976
Chromosome Location . End  8985063 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48C5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016747 nmur-1 C48C5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48C5.1 C48C5.1 1203   X: 8980976-8981134

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48C5.1.1 8980976 8985063 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon243196   159   X: 8980976-8981134 Caenorhabditis elegans
Exon243197   101   X: 8981540-8981640 Caenorhabditis elegans
Exon243198   147   X: 8981686-8981832 Caenorhabditis elegans
Exon243199   100   X: 8981889-8981988 Caenorhabditis elegans
Exon243200   120   X: 8982580-8982699 Caenorhabditis elegans
Exon243201   66   X: 8982744-8982809 Caenorhabditis elegans
Exon243202   84   X: 8982867-8982950 Caenorhabditis elegans
Exon243203   79   X: 8983096-8983174 Caenorhabditis elegans
Exon243204   123   X: 8983862-8983984 Caenorhabditis elegans
Exon243205   154   X: 8984194-8984347 Caenorhabditis elegans
Exon243206   279   X: 8984785-8985063 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48C5.1.1 8980976 8985063 1

1 Sequence

Length
1412

1 Sequence Ontology Term

Identifier Name Description
transcript