WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C35B8.2c.1 Sequence Name  C35B8.2c.1
Length (nt)  3670   Chromosome Location  X: 9216866-9225295
Chromosome . Primary Identifier  X Chromosome Location . Start  9216866
Chromosome Location . End  9225295 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C35B8.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006887 vav-1 C35B8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C35B8.2c C35B8.2c 3012   X: 9217459-9217551

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C35B8.2c.1 9216866 9225295 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon243944   686   X: 9216866-9217551 Caenorhabditis elegans
Exon243949   144   X: 9217598-9217741 Caenorhabditis elegans
Exon243952   90   X: 9218271-9218360 Caenorhabditis elegans
Exon243955   91   X: 9218456-9218546 Caenorhabditis elegans
Exon243958   249   X: 9218590-9218838 Caenorhabditis elegans
Exon243961   110   X: 9219137-9219246 Caenorhabditis elegans
Exon243964   188   X: 9220107-9220294 Caenorhabditis elegans
Exon243967   120   X: 9220344-9220463 Caenorhabditis elegans
Exon243970   149   X: 9221037-9221185 Caenorhabditis elegans
Exon243973   578   X: 9221232-9221809 Caenorhabditis elegans
Exon243976   205   X: 9221908-9222112 Caenorhabditis elegans
Exon243979   311   X: 9222422-9222732 Caenorhabditis elegans
Exon243982   82   X: 9223219-9223300 Caenorhabditis elegans
Exon243985   141   X: 9223368-9223508 Caenorhabditis elegans
Exon243989   176   X: 9223640-9223815 Caenorhabditis elegans
Exon243992   91   X: 9223869-9223959 Caenorhabditis elegans
Exon243995   116   X: 9224209-9224324 Caenorhabditis elegans
Exon243996   143   X: 9225153-9225295 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C35B8.2c.1 9216866 9225295 -1

1 Sequence

Length
3670

1 Sequence Ontology Term

Identifier Name Description
transcript