WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C35B8.2a.1 Sequence Name  C35B8.2a.1
Length (nt)  3526   Chromosome Location  X: 9216867-9224324
Chromosome . Primary Identifier  X Chromosome Location . Start  9216867
Chromosome Location . End  9224324 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C35B8.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006887 vav-1 C35B8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C35B8.2a C35B8.2a 2928   X: 9217459-9217551

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C35B8.2a.1 9216867 9224324 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon243945   685   X: 9216867-9217551 Caenorhabditis elegans
Exon243947   144   X: 9217598-9217741 Caenorhabditis elegans
Exon243950   90   X: 9218271-9218360 Caenorhabditis elegans
Exon243953   91   X: 9218456-9218546 Caenorhabditis elegans
Exon243956   249   X: 9218590-9218838 Caenorhabditis elegans
Exon243959   110   X: 9219137-9219246 Caenorhabditis elegans
Exon243962   188   X: 9220107-9220294 Caenorhabditis elegans
Exon243965   120   X: 9220344-9220463 Caenorhabditis elegans
Exon243968   149   X: 9221037-9221185 Caenorhabditis elegans
Exon243971   578   X: 9221232-9221809 Caenorhabditis elegans
Exon243974   205   X: 9221908-9222112 Caenorhabditis elegans
Exon243977   311   X: 9222422-9222732 Caenorhabditis elegans
Exon243980   82   X: 9223219-9223300 Caenorhabditis elegans
Exon243983   141   X: 9223368-9223508 Caenorhabditis elegans
Exon243987   176   X: 9223640-9223815 Caenorhabditis elegans
Exon243990   91   X: 9223869-9223959 Caenorhabditis elegans
Exon243993   116   X: 9224209-9224324 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C35B8.2a.1 9216867 9224324 -1

1 Sequence

Length
3526

1 Sequence Ontology Term

Identifier Name Description
transcript