WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C35B8.2a Sequence Name  C35B8.2a
Length (nt)  2928   Chromosome Location  X: 9217459-9217551
Chromosome . Primary Identifier  X Chromosome Location . Start  9217459
Chromosome Location . End  9217551
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C35B8.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE38040 VAV-1, isoform a 110.1 975 Caenorhabditis elegans
 

Other

17 RNAi

WormBase ID
WBRNAi00041961
WBRNAi00011649
WBRNAi00109635
WBRNAi00065053
WBRNAi00065054
WBRNAi00029570
WBRNAi00109247
WBRNAi00116160
WBRNAi00109344
WBRNAi00083406
WBRNAi00083429
WBRNAi00083432
WBRNAi00083389
WBRNAi00083435
WBRNAi00083439
WBRNAi00109538
WBRNAi00109441

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C35B8.2a 9217459 9217551 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006887 vav-1 C35B8.2 Caenorhabditis elegans

17 Locations


Feature . Primary Identifier
Start End Strand
CDS:C35B8.2a 9217459 9217551 -1
CDS:C35B8.2a 9217598 9217741 -1
CDS:C35B8.2a 9218271 9218360 -1
CDS:C35B8.2a 9218456 9218546 -1
CDS:C35B8.2a 9218590 9218838 -1
CDS:C35B8.2a 9219137 9219246 -1
CDS:C35B8.2a 9220107 9220294 -1
CDS:C35B8.2a 9220344 9220463 -1
CDS:C35B8.2a 9221037 9221185 -1
CDS:C35B8.2a 9221232 9221809 -1
CDS:C35B8.2a 9221908 9222112 -1
CDS:C35B8.2a 9222422 9222732 -1
CDS:C35B8.2a 9223219 9223300 -1
CDS:C35B8.2a 9223368 9223508 -1
CDS:C35B8.2a 9223640 9223815 -1
CDS:C35B8.2a 9223869 9223959 -1
CDS:C35B8.2a 9224209 9224318 -1

1 Sequence

Length
2928

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C35B8.2a.1 C35B8.2a.1 3526   X: 9216867-9224324