WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0416.1b.1 Sequence Name  B0416.1b.1
Length (nt)  3920   Chromosome Location  X: 9303722-9310438
Chromosome . Primary Identifier  X Chromosome Location . Start  9303722
Chromosome Location . End  9310438 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0416.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015177 tmc-2 B0416.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0416.1b B0416.1b 3660   X: 9303782-9303922

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0416.1b.1 9303722 9310438 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244115   201   X: 9303722-9303922 Caenorhabditis elegans
Exon244118   83   X: 9304225-9304307 Caenorhabditis elegans
Exon244120   141   X: 9304367-9304507 Caenorhabditis elegans
Exon244122   265   X: 9304558-9304822 Caenorhabditis elegans
Exon244124   123   X: 9305107-9305229 Caenorhabditis elegans
Exon244126   146   X: 9305282-9305427 Caenorhabditis elegans
Exon244128   98   X: 9305494-9305591 Caenorhabditis elegans
Exon244132   215   X: 9305640-9305854 Caenorhabditis elegans
Exon244136   116   X: 9305899-9306014 Caenorhabditis elegans
Exon244140   138   X: 9306069-9306206 Caenorhabditis elegans
Exon244144   270   X: 9306354-9306623 Caenorhabditis elegans
Exon244148   196   X: 9306669-9306864 Caenorhabditis elegans
Exon244152   58   X: 9307248-9307305 Caenorhabditis elegans
Exon244156   250   X: 9307354-9307603 Caenorhabditis elegans
Exon244160   126   X: 9307751-9307876 Caenorhabditis elegans
Exon244164   79   X: 9307924-9308002 Caenorhabditis elegans
Exon244168   440   X: 9308098-9308537 Caenorhabditis elegans
Exon244172   105   X: 9308660-9308764 Caenorhabditis elegans
Exon244176   117   X: 9308817-9308933 Caenorhabditis elegans
Exon244182   111   X: 9309117-9309227 Caenorhabditis elegans
Exon244186   117   X: 9309569-9309685 Caenorhabditis elegans
Exon244190   93   X: 9309736-9309828 Caenorhabditis elegans
Exon244194   85   X: 9309907-9309991 Caenorhabditis elegans
Exon244198   66   X: 9310040-9310105 Caenorhabditis elegans
Exon244203   281   X: 9310158-9310438 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0416.1b.1 9303722 9310438 1

1 Sequence

Length
3920

1 Sequence Ontology Term

Identifier Name Description
transcript