WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0416.1a.1 Sequence Name  B0416.1a.1
Length (nt)  3980   Chromosome Location  X: 9303724-9310443
Chromosome . Primary Identifier  X Chromosome Location . Start  9303724
Chromosome Location . End  9310443 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0416.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015177 tmc-2 B0416.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0416.1a B0416.1a 3717   X: 9303782-9303922

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1a.1 9303724 9310443 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244116   199   X: 9303724-9303922 Caenorhabditis elegans
Exon244117   83   X: 9304225-9304307 Caenorhabditis elegans
Exon244119   141   X: 9304367-9304507 Caenorhabditis elegans
Exon244121   265   X: 9304558-9304822 Caenorhabditis elegans
Exon244123   123   X: 9305107-9305229 Caenorhabditis elegans
Exon244125   146   X: 9305282-9305427 Caenorhabditis elegans
Exon244127   98   X: 9305494-9305591 Caenorhabditis elegans
Exon244131   215   X: 9305640-9305854 Caenorhabditis elegans
Exon244135   116   X: 9305899-9306014 Caenorhabditis elegans
Exon244139   138   X: 9306069-9306206 Caenorhabditis elegans
Exon244143   270   X: 9306354-9306623 Caenorhabditis elegans
Exon244147   196   X: 9306669-9306864 Caenorhabditis elegans
Exon244151   58   X: 9307248-9307305 Caenorhabditis elegans
Exon244155   250   X: 9307354-9307603 Caenorhabditis elegans
Exon244159   126   X: 9307751-9307876 Caenorhabditis elegans
Exon244163   79   X: 9307924-9308002 Caenorhabditis elegans
Exon244167   440   X: 9308098-9308537 Caenorhabditis elegans
Exon244171   105   X: 9308660-9308764 Caenorhabditis elegans
Exon244175   117   X: 9308817-9308933 Caenorhabditis elegans
Exon244179   57   X: 9309009-9309065 Caenorhabditis elegans
Exon244181   111   X: 9309117-9309227 Caenorhabditis elegans
Exon244185   117   X: 9309569-9309685 Caenorhabditis elegans
Exon244189   93   X: 9309736-9309828 Caenorhabditis elegans
Exon244193   85   X: 9309907-9309991 Caenorhabditis elegans
Exon244197   66   X: 9310040-9310105 Caenorhabditis elegans
Exon244204   286   X: 9310158-9310443 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1a.1 9303724 9310443 1

1 Sequence

Length
3980

1 Sequence Ontology Term

Identifier Name Description
transcript