WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0416.1d.1 Sequence Name  B0416.1d.1
Length (nt)  2760   Chromosome Location  X: 9305495-9310238
Chromosome . Primary Identifier  X Chromosome Location . Start  9305495
Chromosome Location . End  9310238 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0416.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015177 tmc-2 B0416.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0416.1d B0416.1d 2760   X: 9305495-9305591

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1d.1 9305495 9310238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244130   97   X: 9305495-9305591 Caenorhabditis elegans
Exon244134   215   X: 9305640-9305854 Caenorhabditis elegans
Exon244138   116   X: 9305899-9306014 Caenorhabditis elegans
Exon244142   138   X: 9306069-9306206 Caenorhabditis elegans
Exon244146   270   X: 9306354-9306623 Caenorhabditis elegans
Exon244150   196   X: 9306669-9306864 Caenorhabditis elegans
Exon244154   58   X: 9307248-9307305 Caenorhabditis elegans
Exon244158   250   X: 9307354-9307603 Caenorhabditis elegans
Exon244162   126   X: 9307751-9307876 Caenorhabditis elegans
Exon244166   79   X: 9307924-9308002 Caenorhabditis elegans
Exon244170   440   X: 9308098-9308537 Caenorhabditis elegans
Exon244174   105   X: 9308660-9308764 Caenorhabditis elegans
Exon244178   117   X: 9308817-9308933 Caenorhabditis elegans
Exon244184   111   X: 9309117-9309227 Caenorhabditis elegans
Exon244188   117   X: 9309569-9309685 Caenorhabditis elegans
Exon244192   93   X: 9309736-9309828 Caenorhabditis elegans
Exon244196   85   X: 9309907-9309991 Caenorhabditis elegans
Exon244200   66   X: 9310040-9310105 Caenorhabditis elegans
Exon244202   81   X: 9310158-9310238 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0416.1d.1 9305495 9310238 1

1 Sequence

Length
2760

1 Sequence Ontology Term

Identifier Name Description
transcript