WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E01H11.1f.1 Sequence Name  E01H11.1f.1
Length (nt)  2184   Chromosome Location  X: 9364925-9383624
Chromosome . Primary Identifier  X Chromosome Location . Start  9364925
Chromosome Location . End  9383624 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E01H11.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004033 pkc-2 E01H11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E01H11.1f E01H11.1f 2184   X: 9364925-9364933

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E01H11.1f.1 9364925 9383624 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon244266   9   X: 9364925-9364933 Caenorhabditis elegans
Exon244268   67   X: 9365036-9365102 Caenorhabditis elegans
Exon244270   99   X: 9365746-9365844 Caenorhabditis elegans
Exon244286   70   X: 9380052-9380121 Caenorhabditis elegans
Exon244292   101   X: 9380340-9380440 Caenorhabditis elegans
Exon244298   83   X: 9380582-9380664 Caenorhabditis elegans
Exon244304   241   X: 9380737-9380977 Caenorhabditis elegans
Exon244310   160   X: 9381132-9381291 Caenorhabditis elegans
Exon244316   241   X: 9381338-9381578 Caenorhabditis elegans
Exon244322   321   X: 9381624-9381944 Caenorhabditis elegans
Exon244328   204   X: 9382224-9382427 Caenorhabditis elegans
Exon244334   211   X: 9382476-9382686 Caenorhabditis elegans
Exon244340   140   X: 9382734-9382873 Caenorhabditis elegans
Exon244346   78   X: 9383014-9383091 Caenorhabditis elegans
Exon244347   159   X: 9383466-9383624 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E01H11.1f.1 9364925 9383624 1

1 Sequence

Length
2184

1 Sequence Ontology Term

Identifier Name Description
transcript