WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202417 Gene Name  E01H11.6
Sequence Name  ? E01H11.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in sensory neurons based on RNA-seq studies. Is affected by cep-1; met-2; and spr-5 based on RNA-seq studies. Is affected by Tunicamycin based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 135
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00202417

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:E01H11.6 E01H11.6 135   X: 9369077-9369211
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk964260
gk962707
gk963732
gk964126
tm10742
gk328885
gk712505

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00202417 9369077 9369211 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Fold change > 2, p-value < 0.05. WBPaper00060661:sensory-neuron_enriched
  Transcripts that showed significantly increased expression in spr-5(by101);met-2(n4256) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
  Transcripts that showed significantly decreased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_downregulated
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00202417 9369077 9369211 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
135

1 Sequence Ontology Term