WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5i.1 Sequence Name  F49E2.5i.1
Length (nt)  4211   Chromosome Location  X: 9543664-9560798
Chromosome . Primary Identifier  X Chromosome Location . Start  9543664
Chromosome Location . End  9560798 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5i F49E2.5i 3093   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5i.1 9543664 9560798 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245783   148   X: 9543664-9543811 Caenorhabditis elegans
Exon245796   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245826   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245855   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245884   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245911   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245928   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245949   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246009   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246035   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246070   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246095   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246121   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246147   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246173   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246199   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246225   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246257   1004   X: 9559795-9560798 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5i.1 9543664 9560798 1

1 Sequence

Length
4211

1 Sequence Ontology Term

Identifier Name Description
transcript