WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5a.1 Sequence Name  F49E2.5a.1
Length (nt)  4761   Chromosome Location  X: 9543670-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9543670
Chromosome Location . End  9560799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5a F49E2.5a 3648   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.1 9543670 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245785   142   X: 9543670-9543811 Caenorhabditis elegans
Exon245795   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245817   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245846   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245875   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245904   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245922   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245945   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245993   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246003   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246029   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246064   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246089   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246115   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246141   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246167   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246193   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246219   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246260   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.1 9543670 9560799 1

1 Sequence

Length
4761

1 Sequence Ontology Term

Identifier Name Description
transcript