WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5n.1 Sequence Name  F49E2.5n.1
Length (nt)  4503   Chromosome Location  X: 9543671-9560794
Chromosome . Primary Identifier  X Chromosome Location . Start  9543671
Chromosome Location . End  9560794 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5n F49E2.5n 3396   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.1 9543671 9560794 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245786   141   X: 9543671-9543811 Caenorhabditis elegans
Exon245800   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245835   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245864   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245893   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245919   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245936   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245957   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245973   162   X: 9555416-9555577 Caenorhabditis elegans
Exon245987   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246018   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246044   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246057   93   X: 9556958-9557050 Caenorhabditis elegans
Exon246078   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246104   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246130   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246156   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246182   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246208   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246234   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246256   1000   X: 9559795-9560794 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.1 9543671 9560794 1

1 Sequence

Length
4503

1 Sequence Ontology Term

Identifier Name Description
transcript