WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5m.2 Sequence Name  F49E2.5m.2
Length (nt)  4836   Chromosome Location  X: 9552834-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9552834
Chromosome Location . End  9560799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5m.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5m F49E2.5m 3858   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5m.2 9552834 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245788   167   X: 9552834-9553000 Caenorhabditis elegans
Exon245834   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245863   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245892   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245918   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245935   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245956   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245972   162   X: 9555416-9555577 Caenorhabditis elegans
Exon245986   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246000   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246017   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246043   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246077   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246103   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246129   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246155   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246181   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246207   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246233   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246265   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5m.2 9552834 9560799 1

1 Sequence

Length
4836

1 Sequence Ontology Term

Identifier Name Description
transcript