WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5b.1 Sequence Name  F49E2.5b.1
Length (nt)  3821   Chromosome Location  X: 9552835-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9552835
Chromosome Location . End  9560799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5b F49E2.5b 2844   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.5b.1 9552835 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245789   166   X: 9552835-9553000 Caenorhabditis elegans
Exon245819   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245848   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245877   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245995   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246005   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246031   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246066   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246091   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246117   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246143   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246169   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246195   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246221   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246261   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.5b.1 9552835 9560799 1

1 Sequence

Length
3821

1 Sequence Ontology Term

Identifier Name Description
transcript