WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5n.2 Sequence Name  F49E2.5n.2
Length (nt)  4369   Chromosome Location  X: 9552839-9560799
Chromosome . Primary Identifier  X Chromosome Location . Start  9552839
Chromosome Location . End  9560799 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5n.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5n F49E2.5n 3396   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.2 9552839 9560799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245793   162   X: 9552839-9553000 Caenorhabditis elegans
Exon245836   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245865   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245894   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245920   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245937   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245958   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245974   162   X: 9555416-9555577 Caenorhabditis elegans
Exon245988   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246019   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246045   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246058   93   X: 9556958-9557050 Caenorhabditis elegans
Exon246079   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246105   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246131   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246157   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246183   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246209   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246235   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246266   1005   X: 9559795-9560799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5n.2 9552839 9560799 1

1 Sequence

Length
4369

1 Sequence Ontology Term

Identifier Name Description
transcript