WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5a.2 Sequence Name  F49E2.5a.2
Length (nt)  4620   Chromosome Location  X: 9552841-9560800
Chromosome . Primary Identifier  X Chromosome Location . Start  9552841
Chromosome Location . End  9560800 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5a F49E2.5a 3648   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.2 9552841 9560800 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245801   160   X: 9552841-9553000 Caenorhabditis elegans
Exon245818   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245847   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245876   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245905   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245923   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245946   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245994   555   X: 9555799-9556353 Caenorhabditis elegans
Exon246004   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246030   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246065   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246090   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246116   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246142   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246168   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246194   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246220   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246267   1006   X: 9559795-9560800 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5a.2 9552841 9560800 1

1 Sequence

Length
4620

1 Sequence Ontology Term

Identifier Name Description
transcript