WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.10b.1 Sequence Name  Y71F9B.10b.1
Length (nt)  4302   Chromosome Location  I: 2761168-2776100
Chromosome . Primary Identifier  I Chromosome Location . Start  2761168
Chromosome Location . End  2776100 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.10b Y71F9B.10b 4134   I: 2761318-2761513

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10b.1 2761168 2776100 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5207   346   I: 2761168-2761513 Caenorhabditis elegans
Exon5213   246   I: 2762147-2762392 Caenorhabditis elegans
Exon5219   957   I: 2763442-2764398 Caenorhabditis elegans
Exon5224   254   I: 2765092-2765345 Caenorhabditis elegans
Exon5230   38   I: 2765640-2765677 Caenorhabditis elegans
Exon5233   159   I: 2765738-2765896 Caenorhabditis elegans
Exon5239   660   I: 2767170-2767829 Caenorhabditis elegans
Exon5245   224   I: 2768648-2768871 Caenorhabditis elegans
Exon5251   112   I: 2769761-2769872 Caenorhabditis elegans
Exon5259   570   I: 2770801-2771370 Caenorhabditis elegans
Exon5263   215   I: 2772770-2772984 Caenorhabditis elegans
Exon5269   143   I: 2775424-2775566 Caenorhabditis elegans
Exon5273   88   I: 2775614-2775701 Caenorhabditis elegans
Exon5277   134   I: 2775761-2775894 Caenorhabditis elegans
Exon5281   156   I: 2775945-2776100 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.10b.1 2761168 2776100 -1

1 Sequence

Length
4302

1 Sequence Ontology Term

Identifier Name Description
transcript