WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5o.1 Sequence Name  F49E2.5o.1
Length (nt)  4101   Chromosome Location  X: 9552891-9560793
Chromosome . Primary Identifier  X Chromosome Location . Start  9552891
Chromosome Location . End  9560793 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5o.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5o F49E2.5o 3186   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5o.1 9552891 9560793 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245815   110   X: 9552891-9553000 Caenorhabditis elegans
Exon245837   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245866   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245895   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245921   249   X: 9554299-9554547 Caenorhabditis elegans
Exon245938   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245959   423   X: 9554903-9555325 Caenorhabditis elegans
Exon246020   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246046   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246059   93   X: 9556958-9557050 Caenorhabditis elegans
Exon246080   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246106   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246132   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246158   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246184   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246210   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246236   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246255   999   X: 9559795-9560793 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5o.1 9552891 9560793 1

1 Sequence

Length
4101

1 Sequence Ontology Term

Identifier Name Description
transcript