WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.5s.1 Sequence Name  F49E2.5s.1
Length (nt)  3974   Chromosome Location  X: 9552891-9560798
Chromosome . Primary Identifier  X Chromosome Location . Start  9552891
Chromosome Location . End  9560798 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.5s.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009888 F49E2.5 F49E2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.5s F49E2.5s 3054   X: 9552891-9553000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5s.1 9552891 9560798 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245816   110   X: 9552891-9553000 Caenorhabditis elegans
Exon245841   88   X: 9553049-9553136 Caenorhabditis elegans
Exon245870   432   X: 9553451-9553882 Caenorhabditis elegans
Exon245899   222   X: 9553937-9554158 Caenorhabditis elegans
Exon245942   132   X: 9554692-9554823 Caenorhabditis elegans
Exon245963   423   X: 9554903-9555325 Caenorhabditis elegans
Exon245978   162   X: 9555416-9555577 Caenorhabditis elegans
Exon245992   48   X: 9555626-9555673 Caenorhabditis elegans
Exon246024   90   X: 9556628-9556717 Caenorhabditis elegans
Exon246050   69   X: 9556766-9556834 Caenorhabditis elegans
Exon246084   189   X: 9557218-9557406 Caenorhabditis elegans
Exon246110   156   X: 9557795-9557950 Caenorhabditis elegans
Exon246136   424   X: 9558259-9558682 Caenorhabditis elegans
Exon246162   140   X: 9558956-9559095 Caenorhabditis elegans
Exon246188   120   X: 9559227-9559346 Caenorhabditis elegans
Exon246214   90   X: 9559478-9559567 Caenorhabditis elegans
Exon246240   75   X: 9559617-9559691 Caenorhabditis elegans
Exon246259   1004   X: 9559795-9560798 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F49E2.5s.1 9552891 9560798 1

1 Sequence

Length
3974

1 Sequence Ontology Term

Identifier Name Description
transcript