WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03D8.6a.1 Sequence Name  W03D8.6a.1
Length (nt)  5113   Chromosome Location  I: 2802822-2815818
Chromosome . Primary Identifier  I Chromosome Location . Start  2802822
Chromosome Location . End  2815818 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03D8.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002174 itx-1 W03D8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03D8.6a W03D8.6a 4938   I: 2802822-2802960

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6a.1 2802822 2815818 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5358   139   I: 2802822-2802960 Caenorhabditis elegans
Exon5359   107   I: 2803997-2804103 Caenorhabditis elegans
Exon5362   97   I: 2804151-2804247 Caenorhabditis elegans
Exon5365   293   I: 2804938-2805230 Caenorhabditis elegans
Exon5370   76   I: 2805324-2805399 Caenorhabditis elegans
Exon5375   268   I: 2805455-2805722 Caenorhabditis elegans
Exon5380   232   I: 2805800-2806031 Caenorhabditis elegans
Exon5385   178   I: 2806794-2806971 Caenorhabditis elegans
Exon5390   141   I: 2807018-2807158 Caenorhabditis elegans
Exon5395   124   I: 2807207-2807330 Caenorhabditis elegans
Exon5400   97   I: 2807619-2807715 Caenorhabditis elegans
Exon5405   199   I: 2808246-2808444 Caenorhabditis elegans
Exon5410   150   I: 2808660-2808809 Caenorhabditis elegans
Exon5415   44   I: 2808867-2808910 Caenorhabditis elegans
Exon5420   179   I: 2808963-2809141 Caenorhabditis elegans
Exon5425   144   I: 2809188-2809331 Caenorhabditis elegans
Exon5430   86   I: 2810159-2810244 Caenorhabditis elegans
Exon5435   299   I: 2810289-2810587 Caenorhabditis elegans
Exon5440   186   I: 2810974-2811159 Caenorhabditis elegans
Exon5449   382   I: 2811241-2811622 Caenorhabditis elegans
Exon5454   343   I: 2811674-2812016 Caenorhabditis elegans
Exon5459   160   I: 2812121-2812280 Caenorhabditis elegans
Exon5464   154   I: 2812785-2812938 Caenorhabditis elegans
Exon5469   279   I: 2813000-2813278 Caenorhabditis elegans
Exon5474   96   I: 2813394-2813489 Caenorhabditis elegans
Exon5479   84   I: 2813547-2813630 Caenorhabditis elegans
Exon5484   62   I: 2813686-2813747 Caenorhabditis elegans
Exon5491   161   I: 2814200-2814360 Caenorhabditis elegans
Exon5496   353   I: 2815466-2815818 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03D8.6a.1 2802822 2815818 1

1 Sequence

Length
5113

1 Sequence Ontology Term

Identifier Name Description
transcript