WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.2a.3 Sequence Name  F49E2.2a.3
Length (nt)  1966   Chromosome Location  X: 9567022-9573740
Chromosome . Primary Identifier  X Chromosome Location . Start  9567022
Chromosome Location . End  9573740 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.2a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009886 F49E2.2 F49E2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.2a F49E2.2a 1569   X: 9569408-9569510

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.2a.3 9567022 9573740 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon246354   73   X: 9567022-9567094 Caenorhabditis elegans
Exon246361   132   X: 9569379-9569510 Caenorhabditis elegans
Exon246367   51   X: 9569551-9569601 Caenorhabditis elegans
Exon246372   152   X: 9570238-9570389 Caenorhabditis elegans
Exon246377   239   X: 9570442-9570680 Caenorhabditis elegans
Exon246382   184   X: 9570764-9570947 Caenorhabditis elegans
Exon246387   147   X: 9570990-9571136 Caenorhabditis elegans
Exon246392   168   X: 9572080-9572247 Caenorhabditis elegans
Exon246397   138   X: 9572319-9572456 Caenorhabditis elegans
Exon246402   95   X: 9572507-9572601 Caenorhabditis elegans
Exon246407   193   X: 9572646-9572838 Caenorhabditis elegans
Exon246413   394   X: 9573347-9573740 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.2a.3 9567022 9573740 1

1 Sequence

Length
1966

1 Sequence Ontology Term

Identifier Name Description
transcript