WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E2.2c.1 Sequence Name  F49E2.2c.1
Length (nt)  1731   Chromosome Location  X: 9567296-9573445
Chromosome . Primary Identifier  X Chromosome Location . Start  9567296
Chromosome Location . End  9573445 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E2.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009886 F49E2.2 F49E2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E2.2c F49E2.2c 1731   X: 9567296-9567428

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.2c.1 9567296 9573445 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon246357   133   X: 9567296-9567428 Caenorhabditis elegans
Exon246363   132   X: 9569379-9569510 Caenorhabditis elegans
Exon246369   51   X: 9569551-9569601 Caenorhabditis elegans
Exon246374   152   X: 9570238-9570389 Caenorhabditis elegans
Exon246379   239   X: 9570442-9570680 Caenorhabditis elegans
Exon246384   184   X: 9570764-9570947 Caenorhabditis elegans
Exon246389   147   X: 9570990-9571136 Caenorhabditis elegans
Exon246394   168   X: 9572080-9572247 Caenorhabditis elegans
Exon246399   138   X: 9572319-9572456 Caenorhabditis elegans
Exon246404   95   X: 9572507-9572601 Caenorhabditis elegans
Exon246409   193   X: 9572646-9572838 Caenorhabditis elegans
Exon246410   99   X: 9573347-9573445 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E2.2c.1 9567296 9573445 1

1 Sequence

Length
1731

1 Sequence Ontology Term

Identifier Name Description
transcript