WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.11.1 Sequence Name  Y54E10A.11.1
Length (nt)  4596   Chromosome Location  I: 3176418-3192857
Chromosome . Primary Identifier  I Chromosome Location . Start  3176418
Chromosome Location . End  3192857 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.11.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021831 Y54E10A.11 Y54E10A.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.11 Y54E10A.11 4341   I: 3176512-3176574

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.11.1 3176418 3192857 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6149   157   I: 3176418-3176574 Caenorhabditis elegans
Exon6150   614   I: 3178203-3178816 Caenorhabditis elegans
Exon6152   262   I: 3179674-3179935 Caenorhabditis elegans
Exon6154   70   I: 3179992-3180061 Caenorhabditis elegans
Exon6156   443   I: 3180885-3181327 Caenorhabditis elegans
Exon6158   133   I: 3183062-3183194 Caenorhabditis elegans
Exon6160   87   I: 3183244-3183330 Caenorhabditis elegans
Exon6162   280   I: 3184316-3184595 Caenorhabditis elegans
Exon6164   148   I: 3185597-3185744 Caenorhabditis elegans
Exon6166   978   I: 3185792-3186769 Caenorhabditis elegans
Exon6168   578   I: 3187892-3188469 Caenorhabditis elegans
Exon6170   562   I: 3190209-3190770 Caenorhabditis elegans
Exon6172   87   I: 3192525-3192611 Caenorhabditis elegans
Exon6175   197   I: 3192661-3192857 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.11.1 3176418 3192857 -1

1 Sequence

Length
4596

1 Sequence Ontology Term

Identifier Name Description
transcript