WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10A.11.2 Sequence Name  Y54E10A.11.2
Length (nt)  4479   Chromosome Location  I: 3176418-3192740
Chromosome . Primary Identifier  I Chromosome Location . Start  3176418
Chromosome Location . End  3192740 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.11.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021831 Y54E10A.11 Y54E10A.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.11 Y54E10A.11 4341   I: 3176512-3176574

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.11.2 3176418 3192740 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6148   157   I: 3176418-3176574 Caenorhabditis elegans
Exon6151   614   I: 3178203-3178816 Caenorhabditis elegans
Exon6153   262   I: 3179674-3179935 Caenorhabditis elegans
Exon6155   70   I: 3179992-3180061 Caenorhabditis elegans
Exon6157   443   I: 3180885-3181327 Caenorhabditis elegans
Exon6159   133   I: 3183062-3183194 Caenorhabditis elegans
Exon6161   87   I: 3183244-3183330 Caenorhabditis elegans
Exon6163   280   I: 3184316-3184595 Caenorhabditis elegans
Exon6165   148   I: 3185597-3185744 Caenorhabditis elegans
Exon6167   978   I: 3185792-3186769 Caenorhabditis elegans
Exon6169   578   I: 3187892-3188469 Caenorhabditis elegans
Exon6171   562   I: 3190209-3190770 Caenorhabditis elegans
Exon6173   87   I: 3192525-3192611 Caenorhabditis elegans
Exon6174   80   I: 3192661-3192740 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10A.11.2 3176418 3192740 -1

1 Sequence

Length
4479

1 Sequence Ontology Term

Identifier Name Description
transcript