WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47A4.3c.1 Sequence Name  F47A4.3c.1
Length (nt)  2555   Chromosome Location  X: 9823760-9831284
Chromosome . Primary Identifier  X Chromosome Location . Start  9823760
Chromosome Location . End  9831284 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47A4.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009800 rrc-1 F47A4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47A4.3c F47A4.3c 2277   X: 9823964-9824052

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.3c.1 9823760 9831284 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247115   293   X: 9823760-9824052 Caenorhabditis elegans
Exon247119   126   X: 9824300-9824425 Caenorhabditis elegans
Exon247122   178   X: 9825003-9825180 Caenorhabditis elegans
Exon247123   238   X: 9825418-9825655 Caenorhabditis elegans
Exon247128   208   X: 9825705-9825912 Caenorhabditis elegans
Exon247131   122   X: 9825958-9826079 Caenorhabditis elegans
Exon247134   336   X: 9826333-9826668 Caenorhabditis elegans
Exon247137   293   X: 9826712-9827004 Caenorhabditis elegans
Exon247140   129   X: 9827485-9827613 Caenorhabditis elegans
Exon247143   123   X: 9827666-9827788 Caenorhabditis elegans
Exon247146   84   X: 9828588-9828671 Caenorhabditis elegans
Exon247149   130   X: 9828721-9828850 Caenorhabditis elegans
Exon247152   150   X: 9829086-9829235 Caenorhabditis elegans
Exon247155   145   X: 9831140-9831284 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.3c.1 9823760 9831284 -1

1 Sequence

Length
2555

1 Sequence Ontology Term

Identifier Name Description
transcript