WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B1.3.1 Sequence Name  R07B1.3.1
Length (nt)  1728   Chromosome Location  X: 9858365-9861738
Chromosome . Primary Identifier  X Chromosome Location . Start  9858365
Chromosome Location . End  9861738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B1.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011076 scav-5 R07B1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B1.3 R07B1.3 1611   X: 9858393-9858509

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B1.3.1 9858365 9861738 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247189   145   X: 9858365-9858509 Caenorhabditis elegans
Exon247190   176   X: 9858563-9858738 Caenorhabditis elegans
Exon247191   151   X: 9858785-9858935 Caenorhabditis elegans
Exon247192   101   X: 9858979-9859079 Caenorhabditis elegans
Exon247193   70   X: 9859124-9859193 Caenorhabditis elegans
Exon247194   87   X: 9859241-9859327 Caenorhabditis elegans
Exon247195   148   X: 9859510-9859657 Caenorhabditis elegans
Exon247196   235   X: 9859704-9859938 Caenorhabditis elegans
Exon247197   92   X: 9860600-9860691 Caenorhabditis elegans
Exon247198   140   X: 9860857-9860996 Caenorhabditis elegans
Exon247199   74   X: 9861293-9861366 Caenorhabditis elegans
Exon247200   309   X: 9861430-9861738 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B1.3.1 9858365 9861738 1

1 Sequence

Length
1728

1 Sequence Ontology Term

Identifier Name Description
transcript