WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R07B1.8a Sequence Name  R07B1.8a
Length (nt)  1278   Chromosome Location  X: 9870886-9870960
Chromosome . Primary Identifier  X Chromosome Location . Start  9870886
Chromosome Location . End  9870960
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B1.8a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE38626 PUGS-5, isoform a 48.0 425 Caenorhabditis elegans
 

Other

1 RNAi

WormBase ID
WBRNAi00017506

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R07B1.8a 9870886 9870960 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001608 pugs-5 R07B1.8 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:R07B1.8a 9870886 9870960 -1
CDS:R07B1.8a 9871020 9871243 -1
CDS:R07B1.8a 9871290 9871528 -1
CDS:R07B1.8a 9871576 9871772 -1
CDS:R07B1.8a 9871820 9871938 -1
CDS:R07B1.8a 9872130 9872508 -1
CDS:R07B1.8a 9872555 9872599 -1

1 Sequence

Length
1278

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R07B1.8a.1 R07B1.8a.1 1587   X: 9870632-9872654