WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y44E3A.6a.2 Sequence Name  Y44E3A.6a.2
Length (nt)  2869   Chromosome Location  I: 3340225-3349900
Chromosome . Primary Identifier  I Chromosome Location . Start  3340225
Chromosome Location . End  3349900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y44E3A.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021551 edc-4 Y44E3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y44E3A.6a Y44E3A.6a 2526   I: 3340559-3340599

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6a.2 3340225 3349900 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6469   375   I: 3340225-3340599 Caenorhabditis elegans
Exon6472   108   I: 3340648-3340755 Caenorhabditis elegans
Exon6477   409   I: 3342218-3342626 Caenorhabditis elegans
Exon6482   290   I: 3343334-3343623 Caenorhabditis elegans
Exon6487   438   I: 3344573-3345010 Caenorhabditis elegans
Exon6492   133   I: 3345438-3345570 Caenorhabditis elegans
Exon6497   528   I: 3346488-3347015 Caenorhabditis elegans
Exon6502   139   I: 3348133-3348271 Caenorhabditis elegans
Exon6507   113   I: 3348334-3348446 Caenorhabditis elegans
Exon6512   129   I: 3348492-3348620 Caenorhabditis elegans
Exon6517   148   I: 3349617-3349764 Caenorhabditis elegans
Exon6523   59   I: 3349842-3349900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y44E3A.6a.2 3340225 3349900 -1

1 Sequence

Length
2869

1 Sequence Ontology Term

Identifier Name Description
transcript