WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C17G1.8.2 Sequence Name  C17G1.8.2
Length (nt)  1158   Chromosome Location  X: 9932371-9937133
Chromosome . Primary Identifier  X Chromosome Location . Start  9932371
Chromosome Location . End  9937133 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C17G1.8.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023491 tsp-21 C17G1.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C17G1.8 C17G1.8 906   X: 9933284-9933358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C17G1.8.2 9932371 9937133 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247527   30   X: 9932371-9932400 Caenorhabditis elegans
Exon247529   112   X: 9933247-9933358 Caenorhabditis elegans
Exon247532   88   X: 9933412-9933499 Caenorhabditis elegans
Exon247534   107   X: 9934898-9935004 Caenorhabditis elegans
Exon247536   69   X: 9935055-9935123 Caenorhabditis elegans
Exon247538   120   X: 9935211-9935330 Caenorhabditis elegans
Exon247540   168   X: 9936318-9936485 Caenorhabditis elegans
Exon247542   84   X: 9936531-9936614 Caenorhabditis elegans
Exon247544   68   X: 9936664-9936731 Caenorhabditis elegans
Exon247546   312   X: 9936822-9937133 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C17G1.8.2 9932371 9937133 1

1 Sequence

Length
1158

1 Sequence Ontology Term

Identifier Name Description
transcript