WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.17.1 Sequence Name  Y47G6A.17.1
Length (nt)  5268   Chromosome Location  I: 3487804-3499706
Chromosome . Primary Identifier  I Chromosome Location . Start  3487804
Chromosome Location . End  3499706 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.17.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021643 ccep-290 Y47G6A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.17 Y47G6A.17 5211   I: 3487861-3487908

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.17.1 3487804 3499706 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7023   105   I: 3487804-3487908 Caenorhabditis elegans
Exon7024   180   I: 3487959-3488138 Caenorhabditis elegans
Exon7025   486   I: 3488185-3488670 Caenorhabditis elegans
Exon7026   90   I: 3488840-3488929 Caenorhabditis elegans
Exon7027   128   I: 3488976-3489103 Caenorhabditis elegans
Exon7028   73   I: 3489151-3489223 Caenorhabditis elegans
Exon7029   112   I: 3489269-3489380 Caenorhabditis elegans
Exon7030   236   I: 3489771-3490006 Caenorhabditis elegans
Exon7031   318   I: 3490061-3490378 Caenorhabditis elegans
Exon7032   194   I: 3490856-3491049 Caenorhabditis elegans
Exon7033   139   I: 3492759-3492897 Caenorhabditis elegans
Exon7034   244   I: 3493446-3493689 Caenorhabditis elegans
Exon7035   179   I: 3493738-3493916 Caenorhabditis elegans
Exon7036   315   I: 3494387-3494701 Caenorhabditis elegans
Exon7037   352   I: 3494819-3495170 Caenorhabditis elegans
Exon7038   290   I: 3495513-3495802 Caenorhabditis elegans
Exon7039   304   I: 3496042-3496345 Caenorhabditis elegans
Exon7040   119   I: 3496396-3496514 Caenorhabditis elegans
Exon7041   661   I: 3497070-3497730 Caenorhabditis elegans
Exon7042   98   I: 3497777-3497874 Caenorhabditis elegans
Exon7043   138   I: 3498225-3498362 Caenorhabditis elegans
Exon7044   402   I: 3498518-3498919 Caenorhabditis elegans
Exon7045   105   I: 3499602-3499706 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.17.1 3487804 3499706 -1

1 Sequence

Length
5268

1 Sequence Ontology Term

Identifier Name Description
transcript