WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42G10.1.2 Sequence Name  F42G10.1.2
Length (nt)  2160   Chromosome Location  X: 10018046-10022166
Chromosome . Primary Identifier  X Chromosome Location . Start  10018046
Chromosome Location . End  10022166 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42G10.1.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009645 F42G10.1 F42G10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42G10.1 F42G10.1 1764   X: 10018228-10018288

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42G10.1.2 10018046 10022166 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247785   243   X: 10018046-10018288 Caenorhabditis elegans
Exon247789   524   X: 10018549-10019072 Caenorhabditis elegans
Exon247791   114   X: 10019124-10019237 Caenorhabditis elegans
Exon247793   144   X: 10019514-10019657 Caenorhabditis elegans
Exon247795   214   X: 10019701-10019914 Caenorhabditis elegans
Exon247797   305   X: 10020180-10020484 Caenorhabditis elegans
Exon247799   178   X: 10020532-10020709 Caenorhabditis elegans
Exon247801   38   X: 10020756-10020793 Caenorhabditis elegans
Exon247803   126   X: 10020838-10020963 Caenorhabditis elegans
Exon247804   123   X: 10021846-10021968 Caenorhabditis elegans
Exon247806   151   X: 10022016-10022166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42G10.1.2 10018046 10022166 -1

1 Sequence

Length
2160

1 Sequence Ontology Term

Identifier Name Description
transcript