WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.23d.1 Sequence Name  Y47G6A.23d.1
Length (nt)  12352   Chromosome Location  I: 3565012-3600729
Chromosome . Primary Identifier  I Chromosome Location . Start  3565012
Chromosome Location . End  3600729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.23d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003060 lpd-3 Y47G6A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.23d Y47G6A.23d 12069   I: 3565243-3565380

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.23d.1 3565012 3600729 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7227   369   I: 3565012-3565380 Caenorhabditis elegans
Exon7233   138   I: 3567297-3567434 Caenorhabditis elegans
Exon7238   453   I: 3568220-3568672 Caenorhabditis elegans
Exon7242   660   I: 3569724-3570383 Caenorhabditis elegans
Exon7246   123   I: 3571156-3571278 Caenorhabditis elegans
Exon7250   693   I: 3571942-3572634 Caenorhabditis elegans
Exon7254   383   I: 3573354-3573736 Caenorhabditis elegans
Exon7258   685   I: 3574537-3575221 Caenorhabditis elegans
Exon7262   1513   I: 3576154-3577666 Caenorhabditis elegans
Exon7266   822   I: 3578714-3579535 Caenorhabditis elegans
Exon7270   96   I: 3580196-3580291 Caenorhabditis elegans
Exon7274   425   I: 3580341-3580765 Caenorhabditis elegans
Exon7278   660   I: 3581847-3582506 Caenorhabditis elegans
Exon7282   112   I: 3583430-3583541 Caenorhabditis elegans
Exon7286   1267   I: 3583595-3584861 Caenorhabditis elegans
Exon7290   313   I: 3585185-3585497 Caenorhabditis elegans
Exon7294   570   I: 3586719-3587288 Caenorhabditis elegans
Exon7298   183   I: 3588103-3588285 Caenorhabditis elegans
Exon7302   252   I: 3589434-3589685 Caenorhabditis elegans
Exon7306   118   I: 3590291-3590408 Caenorhabditis elegans
Exon7310   356   I: 3591006-3591361 Caenorhabditis elegans
Exon7314   120   I: 3592122-3592241 Caenorhabditis elegans
Exon7318   262   I: 3592419-3592680 Caenorhabditis elegans
Exon7322   188   I: 3593645-3593832 Caenorhabditis elegans
Exon7326   339   I: 3594612-3594950 Caenorhabditis elegans
Exon7330   323   I: 3595976-3596298 Caenorhabditis elegans
Exon7334   207   I: 3597300-3597506 Caenorhabditis elegans
Exon7339   143   I: 3598620-3598762 Caenorhabditis elegans
Exon7343   165   I: 3598810-3598974 Caenorhabditis elegans
Exon7347   192   I: 3599765-3599956 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.23d.1 3565012 3600729 -1

1 Sequence

Length
12352

1 Sequence Ontology Term

Identifier Name Description
transcript