WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.23c.1 Sequence Name  Y47G6A.23c.1
Length (nt)  12292   Chromosome Location  I: 3565014-3600677
Chromosome . Primary Identifier  I Chromosome Location . Start  3565014
Chromosome Location . End  3600677 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.23c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003060 lpd-3 Y47G6A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.23c Y47G6A.23c 12063   I: 3565243-3565380

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.23c.1 3565014 3600677 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon7228   367   I: 3565014-3565380 Caenorhabditis elegans
Exon7232   138   I: 3567297-3567434 Caenorhabditis elegans
Exon7237   453   I: 3568220-3568672 Caenorhabditis elegans
Exon7241   660   I: 3569724-3570383 Caenorhabditis elegans
Exon7245   123   I: 3571156-3571278 Caenorhabditis elegans
Exon7249   693   I: 3571942-3572634 Caenorhabditis elegans
Exon7253   383   I: 3573354-3573736 Caenorhabditis elegans
Exon7257   685   I: 3574537-3575221 Caenorhabditis elegans
Exon7261   1513   I: 3576154-3577666 Caenorhabditis elegans
Exon7265   822   I: 3578714-3579535 Caenorhabditis elegans
Exon7269   96   I: 3580196-3580291 Caenorhabditis elegans
Exon7273   425   I: 3580341-3580765 Caenorhabditis elegans
Exon7277   660   I: 3581847-3582506 Caenorhabditis elegans
Exon7281   112   I: 3583430-3583541 Caenorhabditis elegans
Exon7285   1267   I: 3583595-3584861 Caenorhabditis elegans
Exon7289   313   I: 3585185-3585497 Caenorhabditis elegans
Exon7293   570   I: 3586719-3587288 Caenorhabditis elegans
Exon7297   183   I: 3588103-3588285 Caenorhabditis elegans
Exon7301   252   I: 3589434-3589685 Caenorhabditis elegans
Exon7305   118   I: 3590291-3590408 Caenorhabditis elegans
Exon7309   356   I: 3591006-3591361 Caenorhabditis elegans
Exon7313   120   I: 3592122-3592241 Caenorhabditis elegans
Exon7317   262   I: 3592419-3592680 Caenorhabditis elegans
Exon7321   188   I: 3593645-3593832 Caenorhabditis elegans
Exon7325   339   I: 3594612-3594950 Caenorhabditis elegans
Exon7329   323   I: 3595976-3596298 Caenorhabditis elegans
Exon7333   207   I: 3597300-3597506 Caenorhabditis elegans
Exon7337   137   I: 3598620-3598756 Caenorhabditis elegans
Exon7342   165   I: 3598810-3598974 Caenorhabditis elegans
Exon7346   192   I: 3599765-3599956 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.23c.1 3565014 3600677 -1

1 Sequence

Length
12292

1 Sequence Ontology Term

Identifier Name Description
transcript