WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E3.3b.1 Sequence Name  R07E3.3b.1
Length (nt)  1305   Chromosome Location  X: 10333860-10338200
Chromosome . Primary Identifier  X Chromosome Location . Start  10333860
Chromosome Location . End  10338200 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011104 cut-5 R07E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E3.3b R07E3.3b 1140   X: 10334014-10334160

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07E3.3b.1 10333860 10338200 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248653   301   X: 10333860-10334160 Caenorhabditis elegans
Exon248655   86   X: 10334455-10334540 Caenorhabditis elegans
Exon248657   100   X: 10334588-10334687 Caenorhabditis elegans
Exon248659   160   X: 10334812-10334971 Caenorhabditis elegans
Exon248661   116   X: 10335021-10335136 Caenorhabditis elegans
Exon248663   115   X: 10335229-10335343 Caenorhabditis elegans
Exon248666   143   X: 10335438-10335580 Caenorhabditis elegans
Exon248670   159   X: 10337623-10337781 Caenorhabditis elegans
Exon248672   75   X: 10337830-10337904 Caenorhabditis elegans
Exon248674   50   X: 10338151-10338200 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07E3.3b.1 10333860 10338200 -1

1 Sequence

Length
1305

1 Sequence Ontology Term

Identifier Name Description
transcript