WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F6.1a.3 Sequence Name  F46F6.1a.3
Length (nt)  2499   Chromosome Location  X: 10373232-10379342
Chromosome . Primary Identifier  X Chromosome Location . Start  10373232
Chromosome Location . End  10379342 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F6.1a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004375 rme-4 F46F6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F6.1a F46F6.1a 1986   X: 10373602-10374007

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.1a.3 10373232 10379342 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248697   776   X: 10373232-10374007 Caenorhabditis elegans
Exon248701   167   X: 10374571-10374737 Caenorhabditis elegans
Exon248705   129   X: 10374786-10374914 Caenorhabditis elegans
Exon248709   54   X: 10374962-10375015 Caenorhabditis elegans
Exon248713   96   X: 10375270-10375365 Caenorhabditis elegans
Exon248717   336   X: 10375417-10375752 Caenorhabditis elegans
Exon248721   103   X: 10375798-10375900 Caenorhabditis elegans
Exon248725   230   X: 10376322-10376551 Caenorhabditis elegans
Exon248729   169   X: 10376595-10376763 Caenorhabditis elegans
Exon248733   117   X: 10377204-10377320 Caenorhabditis elegans
Exon248737   159   X: 10377384-10377542 Caenorhabditis elegans
Exon248741   72   X: 10377591-10377662 Caenorhabditis elegans
Exon248744   91   X: 10379252-10379342 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.1a.3 10373232 10379342 -1

1 Sequence

Length
2499

1 Sequence Ontology Term

Identifier Name Description
transcript