WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F6.2c.1 Sequence Name  F46F6.2c.1
Length (nt)  3858   Chromosome Location  X: 10397242-10402576
Chromosome . Primary Identifier  X Chromosome Location . Start  10397242
Chromosome Location . End  10402576 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F6.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009793 pkn-1 F46F6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F6.2c F46F6.2c 3057   X: 10397396-10397517

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.2c.1 10397242 10402576 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248787   276   X: 10397242-10397517 Caenorhabditis elegans
Exon248792   293   X: 10398133-10398425 Caenorhabditis elegans
Exon248796   923   X: 10398475-10399397 Caenorhabditis elegans
Exon248800   220   X: 10399470-10399689 Caenorhabditis elegans
Exon248804   102   X: 10399741-10399842 Caenorhabditis elegans
Exon248808   143   X: 10400118-10400260 Caenorhabditis elegans
Exon248812   772   X: 10400477-10401248 Caenorhabditis elegans
Exon248816   194   X: 10401300-10401493 Caenorhabditis elegans
Exon248820   147   X: 10401545-10401691 Caenorhabditis elegans
Exon248824   788   X: 10401789-10402576 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.2c.1 10397242 10402576 1

1 Sequence

Length
3858

1 Sequence Ontology Term

Identifier Name Description
transcript