WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:C39B10.2i.1 Sequence Name  C39B10.2i.1
Length (nt)  1711   Chromosome Location  X: 10454260-10460497
Chromosome . Primary Identifier  X Chromosome Location . Start  10454260
Chromosome Location . End  10460497 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39B10.2i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008022 lgc-41 C39B10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39B10.2i C39B10.2i 1506   X: 10454309-10454358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2i.1 10454260 10460497 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248959   99   X: 10454260-10454358 Caenorhabditis elegans
Exon248977   160   X: 10454553-10454712 Caenorhabditis elegans
Exon248987   110   X: 10454759-10454868 Caenorhabditis elegans
Exon248997   147   X: 10454929-10455075 Caenorhabditis elegans
Exon249007   47   X: 10455121-10455167 Caenorhabditis elegans
Exon249017   162   X: 10455215-10455376 Caenorhabditis elegans
Exon249027   129   X: 10456230-10456358 Caenorhabditis elegans
Exon249037   56   X: 10456401-10456456 Caenorhabditis elegans
Exon249047   67   X: 10456532-10456598 Caenorhabditis elegans
Exon249057   123   X: 10456654-10456776 Caenorhabditis elegans
Exon249077   120   X: 10457945-10458064 Caenorhabditis elegans
Exon249083   75   X: 10458116-10458190 Caenorhabditis elegans
Exon249097   122   X: 10458243-10458364 Caenorhabditis elegans
Exon249104   294   X: 10460204-10460497 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2i.1 10454260 10460497 1

1 Sequence

Length
1711

1 Sequence Ontology Term

Identifier Name Description
transcript