WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39B10.2f.1 Sequence Name  C39B10.2f.1
Length (nt)  1779   Chromosome Location  X: 10454261-10460506
Chromosome . Primary Identifier  X Chromosome Location . Start  10454261
Chromosome Location . End  10460506 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39B10.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008022 lgc-41 C39B10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39B10.2f C39B10.2f 1566   X: 10454309-10454358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2f.1 10454261 10460506 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248960   98   X: 10454261-10454358 Caenorhabditis elegans
Exon248974   160   X: 10454553-10454712 Caenorhabditis elegans
Exon248984   110   X: 10454759-10454868 Caenorhabditis elegans
Exon248994   147   X: 10454929-10455075 Caenorhabditis elegans
Exon249004   47   X: 10455121-10455167 Caenorhabditis elegans
Exon249014   162   X: 10455215-10455376 Caenorhabditis elegans
Exon249024   129   X: 10456230-10456358 Caenorhabditis elegans
Exon249034   56   X: 10456401-10456456 Caenorhabditis elegans
Exon249044   67   X: 10456532-10456598 Caenorhabditis elegans
Exon249054   123   X: 10456654-10456776 Caenorhabditis elegans
Exon249065   69   X: 10457110-10457178 Caenorhabditis elegans
Exon249074   120   X: 10457945-10458064 Caenorhabditis elegans
Exon249086   66   X: 10458125-10458190 Caenorhabditis elegans
Exon249094   122   X: 10458243-10458364 Caenorhabditis elegans
Exon249108   303   X: 10460204-10460506 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2f.1 10454261 10460506 1

1 Sequence

Length
1779

1 Sequence Ontology Term

Identifier Name Description
transcript