WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39B10.2j.1 Sequence Name  C39B10.2j.1
Length (nt)  1693   Chromosome Location  X: 10454270-10460498
Chromosome . Primary Identifier  X Chromosome Location . Start  10454270
Chromosome Location . End  10460498 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39B10.2j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008022 lgc-41 C39B10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39B10.2j C39B10.2j 1497   X: 10454309-10454358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2j.1 10454270 10460498 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248962   89   X: 10454270-10454358 Caenorhabditis elegans
Exon248978   160   X: 10454553-10454712 Caenorhabditis elegans
Exon248988   110   X: 10454759-10454868 Caenorhabditis elegans
Exon248998   147   X: 10454929-10455075 Caenorhabditis elegans
Exon249008   47   X: 10455121-10455167 Caenorhabditis elegans
Exon249018   162   X: 10455215-10455376 Caenorhabditis elegans
Exon249028   129   X: 10456230-10456358 Caenorhabditis elegans
Exon249038   56   X: 10456401-10456456 Caenorhabditis elegans
Exon249048   67   X: 10456532-10456598 Caenorhabditis elegans
Exon249058   123   X: 10456654-10456776 Caenorhabditis elegans
Exon249078   120   X: 10457945-10458064 Caenorhabditis elegans
Exon249088   66   X: 10458125-10458190 Caenorhabditis elegans
Exon249098   122   X: 10458243-10458364 Caenorhabditis elegans
Exon249106   295   X: 10460204-10460498 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2j.1 10454270 10460498 1

1 Sequence

Length
1693

1 Sequence Ontology Term

Identifier Name Description
transcript