WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39B10.2d.1 Sequence Name  C39B10.2d.1
Length (nt)  1704   Chromosome Location  X: 10454309-10460341
Chromosome . Primary Identifier  X Chromosome Location . Start  10454309
Chromosome Location . End  10460341 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39B10.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008022 lgc-41 C39B10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39B10.2d C39B10.2d 1704   X: 10454309-10454358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2d.1 10454309 10460341 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248964   50   X: 10454309-10454358 Caenorhabditis elegans
Exon248972   160   X: 10454553-10454712 Caenorhabditis elegans
Exon248982   110   X: 10454759-10454868 Caenorhabditis elegans
Exon248992   147   X: 10454929-10455075 Caenorhabditis elegans
Exon249002   47   X: 10455121-10455167 Caenorhabditis elegans
Exon249012   162   X: 10455215-10455376 Caenorhabditis elegans
Exon249022   129   X: 10456230-10456358 Caenorhabditis elegans
Exon249032   56   X: 10456401-10456456 Caenorhabditis elegans
Exon249042   67   X: 10456532-10456598 Caenorhabditis elegans
Exon249052   123   X: 10456654-10456776 Caenorhabditis elegans
Exon249063   198   X: 10457062-10457259 Caenorhabditis elegans
Exon249072   120   X: 10457945-10458064 Caenorhabditis elegans
Exon249080   75   X: 10458116-10458190 Caenorhabditis elegans
Exon249092   122   X: 10458243-10458364 Caenorhabditis elegans
Exon249099   138   X: 10460204-10460341 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2d.1 10454309 10460341 1

1 Sequence

Length
1704

1 Sequence Ontology Term

Identifier Name Description
transcript