WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39B10.2a.1 Sequence Name  C39B10.2a.1
Length (nt)  1780   Chromosome Location  X: 10454309-10460498
Chromosome . Primary Identifier  X Chromosome Location . Start  10454309
Chromosome Location . End  10460498 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39B10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008022 lgc-41 C39B10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39B10.2a C39B10.2a 1623   X: 10454309-10454358

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2a.1 10454309 10460498 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248968   50   X: 10454309-10454358 Caenorhabditis elegans
Exon248969   160   X: 10454553-10454712 Caenorhabditis elegans
Exon248979   110   X: 10454759-10454868 Caenorhabditis elegans
Exon248989   147   X: 10454929-10455075 Caenorhabditis elegans
Exon248999   47   X: 10455121-10455167 Caenorhabditis elegans
Exon249009   162   X: 10455215-10455376 Caenorhabditis elegans
Exon249019   129   X: 10456230-10456358 Caenorhabditis elegans
Exon249029   56   X: 10456401-10456456 Caenorhabditis elegans
Exon249039   67   X: 10456532-10456598 Caenorhabditis elegans
Exon249049   123   X: 10456654-10456776 Caenorhabditis elegans
Exon249060   117   X: 10457062-10457178 Caenorhabditis elegans
Exon249069   120   X: 10457945-10458064 Caenorhabditis elegans
Exon249079   75   X: 10458116-10458190 Caenorhabditis elegans
Exon249089   122   X: 10458243-10458364 Caenorhabditis elegans
Exon249105   295   X: 10460204-10460498 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39B10.2a.1 10454309 10460498 1

1 Sequence

Length
1780

1 Sequence Ontology Term

Identifier Name Description
transcript