WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C7.2b.2 Sequence Name  F57C7.2b.2
Length (nt)  2510   Chromosome Location  X: 10576953-10581044
Chromosome . Primary Identifier  X Chromosome Location . Start  10576953
Chromosome Location . End  10581044 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C7.2b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003733 nhx-5 F57C7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C7.2b F57C7.2b 1836   X: 10577129-10577227

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2b.2 10576953 10581044 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249408   275   X: 10576953-10577227 Caenorhabditis elegans
Exon249414   142   X: 10577289-10577430 Caenorhabditis elegans
Exon249418   115   X: 10577475-10577589 Caenorhabditis elegans
Exon249422   109   X: 10577751-10577859 Caenorhabditis elegans
Exon249426   155   X: 10577906-10578060 Caenorhabditis elegans
Exon249430   95   X: 10578129-10578223 Caenorhabditis elegans
Exon249434   106   X: 10578276-10578381 Caenorhabditis elegans
Exon249438   89   X: 10578430-10578518 Caenorhabditis elegans
Exon249442   150   X: 10578559-10578708 Caenorhabditis elegans
Exon249446   98   X: 10578964-10579061 Caenorhabditis elegans
Exon249450   105   X: 10579109-10579213 Caenorhabditis elegans
Exon249454   86   X: 10579257-10579342 Caenorhabditis elegans
Exon249458   88   X: 10579463-10579550 Caenorhabditis elegans
Exon249462   92   X: 10579598-10579689 Caenorhabditis elegans
Exon249466   171   X: 10579734-10579904 Caenorhabditis elegans
Exon249470   106   X: 10580132-10580237 Caenorhabditis elegans
Exon249473   133   X: 10580389-10580521 Caenorhabditis elegans
Exon249477   40   X: 10580600-10580639 Caenorhabditis elegans
Exon249481   355   X: 10580690-10581044 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2b.2 10576953 10581044 1

1 Sequence

Length
2510

1 Sequence Ontology Term

Identifier Name Description
transcript