WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57C7.2b.1 Sequence Name  F57C7.2b.1
Length (nt)  2412   Chromosome Location  X: 10576960-10581034
Chromosome . Primary Identifier  X Chromosome Location . Start  10576960
Chromosome Location . End  10581034 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57C7.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003733 nhx-5 F57C7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57C7.2b F57C7.2b 1836   X: 10577129-10577227

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2b.1 10576960 10581034 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249410   268   X: 10576960-10577227 Caenorhabditis elegans
Exon249413   142   X: 10577289-10577430 Caenorhabditis elegans
Exon249417   115   X: 10577475-10577589 Caenorhabditis elegans
Exon249421   109   X: 10577751-10577859 Caenorhabditis elegans
Exon249425   155   X: 10577906-10578060 Caenorhabditis elegans
Exon249429   95   X: 10578129-10578223 Caenorhabditis elegans
Exon249433   106   X: 10578276-10578381 Caenorhabditis elegans
Exon249437   89   X: 10578430-10578518 Caenorhabditis elegans
Exon249441   150   X: 10578559-10578708 Caenorhabditis elegans
Exon249445   98   X: 10578964-10579061 Caenorhabditis elegans
Exon249449   105   X: 10579109-10579213 Caenorhabditis elegans
Exon249453   86   X: 10579257-10579342 Caenorhabditis elegans
Exon249457   88   X: 10579463-10579550 Caenorhabditis elegans
Exon249461   92   X: 10579598-10579689 Caenorhabditis elegans
Exon249465   171   X: 10579734-10579904 Caenorhabditis elegans
Exon249469   106   X: 10580132-10580237 Caenorhabditis elegans
Exon249472   52   X: 10580389-10580440 Caenorhabditis elegans
Exon249476   40   X: 10580600-10580639 Caenorhabditis elegans
Exon249480   345   X: 10580690-10581034 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57C7.2b.1 10576960 10581034 1

1 Sequence

Length
2412

1 Sequence Ontology Term

Identifier Name Description
transcript