WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3a.1 Sequence Name  F11A1.3a.1
Length (nt)  3656   Chromosome Location  X: 10644440-10666875
Chromosome . Primary Identifier  X Chromosome Location . Start  10644440
Chromosome Location . End  10666875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3a F11A1.3a 2262   X: 10644440-10644550

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3a.1 10644440 10666875 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249701   111   X: 10644440-10644550 Caenorhabditis elegans
Exon249702   60   X: 10645838-10645897 Caenorhabditis elegans
Exon249713   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249723   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249732   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249741   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249750   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249759   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249768   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249777   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249786   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249801   352   X: 10663807-10664158 Caenorhabditis elegans
Exon249810   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249820   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249830   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249840   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249856   1487   X: 10665389-10666875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3a.1 10644440 10666875 1

1 Sequence

Length
3656

1 Sequence Ontology Term

Identifier Name Description
transcript