WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3e.4 Sequence Name  F11A1.3e.4
Length (nt)  3592   Chromosome Location  X: 10647057-10666875
Chromosome . Primary Identifier  X Chromosome Location . Start  10647057
Chromosome Location . End  10666875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3e.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3e F11A1.3e 2037   X: 10660802-10660868

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3e.4 10647057 10666875 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249679   155   X: 10647057-10647211 Caenorhabditis elegans
Exon249691   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249702   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249711   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249720   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249729   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249738   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249747   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249756   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249765   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249771   107   X: 10663807-10663913 Caenorhabditis elegans
Exon249780   197   X: 10663962-10664158 Caenorhabditis elegans
Exon249789   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249800   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249810   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249820   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249832   1487   X: 10665389-10666875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3e.4 10647057 10666875 1

1 Sequence

Length
3592

1 Sequence Ontology Term

Identifier Name Description
transcript