WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11A1.3f.1 Sequence Name  F11A1.3f.1
Length (nt)  2253   Chromosome Location  X: 10659551-10665481
Chromosome . Primary Identifier  X Chromosome Location . Start  10659551
Chromosome Location . End  10665481 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11A1.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11A1.3f F11A1.3f 2112   X: 10659692-10659760

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3f.1 10659551 10665481 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249711   210   X: 10659551-10659760 Caenorhabditis elegans
Exon249719   73   X: 10660796-10660868 Caenorhabditis elegans
Exon249730   83   X: 10661303-10661385 Caenorhabditis elegans
Exon249739   123   X: 10661433-10661555 Caenorhabditis elegans
Exon249748   267   X: 10661601-10661867 Caenorhabditis elegans
Exon249757   48   X: 10661934-10661981 Caenorhabditis elegans
Exon249766   72   X: 10662030-10662101 Caenorhabditis elegans
Exon249775   96   X: 10662795-10662890 Caenorhabditis elegans
Exon249784   75   X: 10663250-10663324 Caenorhabditis elegans
Exon249793   98   X: 10663660-10663757 Caenorhabditis elegans
Exon249799   107   X: 10663807-10663913 Caenorhabditis elegans
Exon249808   197   X: 10663962-10664158 Caenorhabditis elegans
Exon249817   180   X: 10664406-10664585 Caenorhabditis elegans
Exon249828   293   X: 10664630-10664922 Caenorhabditis elegans
Exon249838   162   X: 10664970-10665131 Caenorhabditis elegans
Exon249848   76   X: 10665178-10665253 Caenorhabditis elegans
Exon249852   93   X: 10665389-10665481 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F11A1.3f.1 10659551 10665481 1

1 Sequence

Length
2253

1 Sequence Ontology Term

Identifier Name Description
transcript