WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1c.2 Sequence Name  T05A10.1c.2
Length (nt)  6739   Chromosome Location  X: 10773081-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773081
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1c T05A10.1c 5079   X: 10775285-10775344

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249991   574   X: 10773081-10773654 Caenorhabditis elegans
Exon250008   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250022   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250035   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250048   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250061   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250075   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250090   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250104   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250119   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250134   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250149   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250164   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250179   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250194   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250209   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250224   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250239   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250254   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250279   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250292   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250304   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250316   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250329   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250340   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

1 Sequence

Length
6739

1 Sequence Ontology Term

Identifier Name Description
transcript