WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1c.2 Sequence Name  T05A10.1c.2
Length (nt)  6739   Chromosome Location  X: 10773081-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773081
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1c T05A10.1c 5079   X: 10775285-10775344

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250018   574   X: 10773081-10773654 Caenorhabditis elegans
Exon250035   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250049   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250062   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250075   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250088   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250102   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250117   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250131   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250146   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250161   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250176   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250191   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250206   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250221   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250236   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250251   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250266   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250281   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250306   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250319   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250331   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250343   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250356   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250367   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1c.2 10773081 10782386 1

1 Sequence

Length
6739

1 Sequence Ontology Term

Identifier Name Description
transcript