WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1d.1 Sequence Name  T05A10.1d.1
Length (nt)  6729   Chromosome Location  X: 10773091-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1d T05A10.1d 6729   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1d.1 10773091 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249994   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250009   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250023   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250036   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250049   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250062   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250076   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250091   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250105   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250120   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250135   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250150   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250165   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250180   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250195   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250210   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250225   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250240   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250255   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250280   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250293   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250305   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250317   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250330   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250341   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1d.1 10773091 10782386 1

1 Sequence

Length
6729

1 Sequence Ontology Term

Identifier Name Description
transcript