WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1f.1 Sequence Name  T05A10.1f.1
Length (nt)  6471   Chromosome Location  X: 10773091-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1f T05A10.1f 6471   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1f.1 10773091 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249995   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250011   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250025   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250038   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250051   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250064   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250078   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250093   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250107   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250122   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250137   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250152   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250167   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250182   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250197   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250212   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250227   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250242   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250257   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250268   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250295   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250307   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250319   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250332   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250342   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1f.1 10773091 10782386 1

1 Sequence

Length
6471

1 Sequence Ontology Term

Identifier Name Description
transcript